Publications

@article{Palazzo2020,

title = {Decoding Brain Representations by Multimodal Learning of Neural Activity and Visual Features},

author = {Simone Palazzo and Concetto Spampinato and Isaak Kavasidis and Daniela Giordano and Joseph Schmidt and Mubarak Shah},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2020/06/Publications_Decoding-Brain-Representations-by-Multimodal-Learning-of-Neural-Activity-and-Visual-Features.pdf},

year  = {2020},

date = {2020-05-20},

urldate = {2020-05-20},

journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},

pages = {1 - 1},

keywords = {EEG/Brain, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Palazzo2020b,

title = {Decoding Brain Representations by Multimodal Learning of Neural Activity and Visual Features},

author = {Simone Palazzo and Concetto Spampinato and Isaak Kavasidis and Daniela Giordano and Joseph Schmidt and Mubarak Shah},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2020/06/Publications_Decoding-Brain-Representations-by-Multimodal-Learning-of-Neural-Activity-and-Visual-Features.pdf},

year  = {2020},

date = {2020-05-20},

urldate = {2020-05-20},

journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},

pages = {1 - 1},

keywords = {EEG/Brain, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{MS2020,

title = {PET/CT and PET/MRI in Optalhalmic Oncology},

author = {Kalemaki MS and Karantanas AH and Exarchos D and Detorakis ET and Zoras O and Marias K and Corina Millo and Ulas Bagci and Pallikaris I and Stratis A and Karatzanis I and Perisinakis K and Koutentakis P and Kontadakis GA and Spandidos DA and Tsatsakis A and Georgios Z. Papadakis},

url = {https://doi.org/10.3892/ijo.2020.4955},

year  = {2020},

date = {2020-03-09},

journal = {International Journal of Oncology},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{MS2020b,

title = {PET/CT and PET/MRI in Optalhalmic Oncology},

author = {Kalemaki MS and Karantanas AH and Exarchos D and Detorakis ET and Zoras O and Marias K and Corina Millo and Ulas Bagci and Pallikaris I and Stratis A and Karatzanis I and Perisinakis K and Koutentakis P and Kontadakis GA and Spandidos DA and Tsatsakis A and Georgios Z. Papadakis},

url = {https://doi.org/10.3892/ijo.2020.4955},

year  = {2020},

date = {2020-03-09},

journal = {International Journal of Oncology},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{LaLonde2020,

title = {Diagnosing Colorectal Polyps in the Wild with Capsule Networks},

author = {Rodney LaLonde and P. Kandel and Concetto Spampinato and M. B. Wallace and Ulas Bagci},

url = {https://github.com/lalonderodney/D-Caps},

year  = {2020},

date = {2020-03-02},

journal = {IEEE ISBI},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{LaLonde2020d,

title = {Diagnosing Colorectal Polyps in the Wild with Capsule Networks},

author = {Rodney LaLonde and P. Kandel and Concetto Spampinato and M. B. Wallace and Ulas Bagci},

url = {https://github.com/lalonderodney/D-Caps},

year  = {2020},

date = {2020-03-02},

journal = {IEEE ISBI},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Masoodi2019,

title = {Instance-level Microtubule Tracking},

author = {S. Masoodi and A. Razi and C. Wright and J. Gatlin and Ulas Bagci},

url = {https://doi.org/10.1109/TMI.2019.2963865},

year  = {2020},

date = {2020-01-03},

journal = {IEEE Transactions on Medical Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Masoodi2019b,

title = {Instance-level Microtubule Tracking},

author = {S. Masoodi and A. Razi and C. Wright and J. Gatlin and Ulas Bagci},

url = {https://doi.org/10.1109/TMI.2019.2963865},

year  = {2020},

date = {2020-01-03},

journal = {IEEE Transactions on Medical Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Tirosh2019,

title = {Computerized Analysis of Brain MR parameters dynamics in young patients with Cushing-Syndrome – a case control study},

author = {A. Tirosh and H. RaviPrakash and Georgios Z. Papadakis and C. Tatsi and E. Belyavskaya and L. Chahralampos and MB. Lodish and Ulas Bagci and Constantine A. Stratakis},

url = {https://doi.org/10.1210/clinem/dgz303},

year  = {2019},

date = {2019-12-30},

journal = {The Journal of Clinical Endocrinology and Metabolism},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Tirosh2019b,

title = {Computerized Analysis of Brain MR parameters dynamics in young patients with Cushing-Syndrome – a case control study},

author = {A. Tirosh and H. RaviPrakash and Georgios Z. Papadakis and C. Tatsi and E. Belyavskaya and L. Chahralampos and MB. Lodish and Ulas Bagci and Constantine A. Stratakis},

url = {https://doi.org/10.1210/clinem/dgz303},

year  = {2019},

date = {2019-12-30},

journal = {The Journal of Clinical Endocrinology and Metabolism},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Hoogenboom2019,

title = {AI in Gastroenterology. Current State of Play and Potential. How will it affect our practice and when?},

author = {S. Hoogenboom and Ulas Bagci and M. B. Wallace},

url = {https://doi.org/10.1016/j.tgie.2019.150634},

year  = {2019},

date = {2019-12-29},

journal = {Techniques in Gastrointestinal Endoscopy, 150634},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Hoogenboom2019b,

title = {AI in Gastroenterology. Current State of Play and Potential. How will it affect our practice and when?},

author = {S. Hoogenboom and Ulas Bagci and M. B. Wallace},

url = {https://doi.org/10.1016/j.tgie.2019.150634},

year  = {2019},

date = {2019-12-29},

journal = {Techniques in Gastrointestinal Endoscopy, 150634},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Stember2019,

title = {Eye-Tracking for Deep Learning Segmentation Using Convolutional Neural Networks: a proof-of-principle application to meningiomas},

author = {JN. Stember and Haydar Celik and E. Krupinski and P. Chang and S. Mutasa and Bradford Wood and A. Lignelli and G. Moonis and S. Jambawalikar and Ulas Bagci},

url = {https://doi.org/10.1007/s10278-019-00220-4},

year  = {2019},

date = {2019-12-28},

journal = {Journal of Digital Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Stember2019b,

title = {Eye-Tracking for Deep Learning Segmentation Using Convolutional Neural Networks: a proof-of-principle application to meningiomas},

author = {JN. Stember and Haydar Celik and E. Krupinski and P. Chang and S. Mutasa and Bradford Wood and A. Lignelli and G. Moonis and S. Jambawalikar and Ulas Bagci},

url = {https://doi.org/10.1007/s10278-019-00220-4},

year  = {2019},

date = {2019-12-28},

journal = {Journal of Digital Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Karaaslan2019,

title = {Artificial Intelligence Assisted Infrastructure Assessment Using Mixed Reality Systems},

author = {E. Karaaslan and Ulas Bagci and F. N. Catbas},

url = {https://doi.org/10.1177%2F0361198119839988},

year  = {2019},

date = {2019-12-27},

journal = {Journal of Transportation Research},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Karaaslan2019b,

title = {Artificial Intelligence Assisted Infrastructure Assessment Using Mixed Reality Systems},

author = {E. Karaaslan and Ulas Bagci and F. N. Catbas},

url = {https://doi.org/10.1177%2F0361198119839988},

year  = {2019},

date = {2019-12-27},

journal = {Journal of Transportation Research},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Torosdagli2019,

title = {Deep Geodesic Learning for Segmentation and Anatomical Landmarking},

author = {N. Torosdagli and Denise Liberton and Payal Verma and Murat Sincan and Janice Lee and Ulas Bagci},

url = {https://doi.org/10.1109/TMI.2018.2875814},

year  = {2019},

date = {2019-12-25},

journal = {IEEE Transactions on Medical Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Torosdagli2019b,

title = {Deep Geodesic Learning for Segmentation and Anatomical Landmarking},

author = {N. Torosdagli and Denise Liberton and Payal Verma and Murat Sincan and Janice Lee and Ulas Bagci},

url = {https://doi.org/10.1109/TMI.2018.2875814},

year  = {2019},

date = {2019-12-25},

journal = {IEEE Transactions on Medical Imaging},

keywords = {Medical},

pubstate = {published},

tppubtype = {article}

}

@article{N2019,

title = {A collaborative computer aided diagnosis (C-CAD) system with eye-tracking, sparse attentional model, and deep learning},

author = {Naji Khosravan and Haydar Celik and Baris Turkbey and Jones EC and Bradford Wood and Ulas Bagci},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_C-CAD.pdf},

year  = {2019},

date = {2019-06-06},

journal = {Medical image analysis. 2019 Jan 1;51:101-15.},

keywords = {Attention, Eye-Tracking, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{I2019d,

title = {A Novel Extension to Fuzzy Connectivity for Body Composition Analysis: Applications in Thigh, Brain, and Whole Body Tissue Segmentation},

author = {Irmakci I and Sarfaraz Hussein and Savran A and Kalyani RR and Reiter D and Chia CW and Fishbein KW and Spencer RG and Ferrucci L and Ulas Bagci},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_NovelExtensionToFuzzyConnectivity.pdf},

year  = {2019},

date = {2019-04-30},

journal = {IEEE Transactions on Biomedical Engineering. 2019 Apr;66(4):1069-81.},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}

@article{I2019db,

title = {A Novel Extension to Fuzzy Connectivity for Body Composition Analysis: Applications in Thigh, Brain, and Whole Body Tissue Segmentation},

author = {Irmakci I and Sarfaraz Hussein and Savran A and Kalyani RR and Reiter D and Chia CW and Fishbein KW and Spencer RG and Ferrucci L and Ulas Bagci},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_NovelExtensionToFuzzyConnectivity.pdf},

year  = {2019},

date = {2019-04-30},

journal = {IEEE Transactions on Biomedical Engineering. 2019 Apr;66(4):1069-81.},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}

@article{U2018,

title = {System and method for image-based quantification of white and brown adipose tissue at the whole-body, organ and body-region levels},

author = {Ulas Bagci and Sarfaraz Hussein},

editor = {University Central Florida Research Foundation Inc (UCFRF) and assignee},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_System-and-method-for-image-based-quantification-of-white-and-brown-adipose-tissue-at-the-whole-body-organ-and-body-region-levels.pdf},

year  = {2019},

date = {2019-04-29},

journal = {United States patent application US 10/157,462. 2018 Dec 18},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}

@article{U2018b,

title = {System and method for image-based quantification of white and brown adipose tissue at the whole-body, organ and body-region levels},

author = {Ulas Bagci and Sarfaraz Hussein},

editor = {University Central Florida Research Foundation Inc (UCFRF) and assignee},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_System-and-method-for-image-based-quantification-of-white-and-brown-adipose-tissue-at-the-whole-body-organ-and-body-region-levels.pdf},

year  = {2019},

date = {2019-04-29},

journal = {United States patent application US 10/157,462. 2018 Dec 18},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}

@article{S2019,

title = {Lung and pancreatic tumor characterization in the deep learning era: novel supervised and unsupervised learning approaches},

author = {Sarfaraz Hussein and Kandel P and Bolan CW and M. B. Wallace and Ulas Bagci},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_Lung-and-Pancreatic-Tumor-Characterization-in-the-Deep-Learning-.pdf},

year  = {2019},

date = {2019-04-28},

journal = {IEEE transactions on medical imaging. 2019 Jan 23.},

keywords = {Classification, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{S2019b,

title = {Lung and pancreatic tumor characterization in the deep learning era: novel supervised and unsupervised learning approaches},

author = {Sarfaraz Hussein and Kandel P and Bolan CW and M. B. Wallace and Ulas Bagci},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_Lung-and-Pancreatic-Tumor-Characterization-in-the-Deep-Learning-.pdf},

year  = {2019},

date = {2019-04-28},

journal = {IEEE transactions on medical imaging. 2019 Jan 23.},

keywords = {Classification, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{DG2019,

title = {Quality Assurance of Computer-Aided Detection and Diagnosis in Colonoscopy},

author = {Vinsard DG and Mori Y and Misawa M and Kudo SE and Rastogi A and Ulas Bagci and Rex DK and M. B. Wallace},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_Quality-Assurance-of-Computer-Aided-Detection-and-Diagnosis-in-Colonoscopy.pdf},

year  = {2019},

date = {2019-03-26},

journal = {Gastrointestinal Endoscopy. 2019 Mar 26.},

keywords = {Detection, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{DG2019b,

title = {Quality Assurance of Computer-Aided Detection and Diagnosis in Colonoscopy},

author = {Vinsard DG and Mori Y and Misawa M and Kudo SE and Rastogi A and Ulas Bagci and Rex DK and M. B. Wallace},

url = {https://www.crcv.ucf.edu/wp-content/uploads/2019/05/Publications_Quality-Assurance-of-Computer-Aided-Detection-and-Diagnosis-in-Colonoscopy.pdf},

year  = {2019},

date = {2019-03-26},

journal = {Gastrointestinal Endoscopy. 2019 Mar 26.},

keywords = {Detection, Medical},

pubstate = {published},

tppubtype = {article}

}

@article{Greena2017,

title = {Brown adipose tissue detected by PET/CT imaging is associated with less central obesity},

author = {Aileen Green and Ulas Bagci and Sarfaraz Hussein and Patrick V. Kelly and Razi Muzaffara and Brent A. Neuschwander-Tetrib and Medhat Osmana},

url = {https://www.crcv.ucf.edu/papers/nmc17.pdf},

year  = {2017},

date = {2017-03-29},

journal = {NuclearMedicine Communications, Volume 38, Issue 7, pp. 629-635, July},

publisher = {NuclearMedicine Communications, Volume 38, Issue 7, pp. 629-635, July 2017.},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}

@article{Greena2017e,

title = {Brown adipose tissue detected by PET/CT imaging is associated with less central obesity},

author = {Aileen Green and Ulas Bagci and Sarfaraz Hussein and Patrick V. Kelly and Razi Muzaffara and Brent A. Neuschwander-Tetrib and Medhat Osmana},

url = {https://www.crcv.ucf.edu/papers/nmc17.pdf},

year  = {2017},

date = {2017-03-29},

journal = {NuclearMedicine Communications, Volume 38, Issue 7, pp. 629-635, July},

publisher = {NuclearMedicine Communications, Volume 38, Issue 7, pp. 629-635, July 2017.},

keywords = {Medical, Segmentation},

pubstate = {published},

tppubtype = {article}

}